Wong, M.Y.; Cheah, J.H.; Soule, C.K.; Hulleman, J.D.; Shoulders, M.D. "A High-Throughput Cell-Based Screening Strategy Identifies Selective Small Molecule Modulators of Type-I Collagen Secretion" 2017in revision. 

Phillips, A.M.; Gonzalez, L.O.; Nekongo, E.E.; Ponomarenko, A.I.; McHugh, S.M.; Butty, V.; Levine, S.S.; Lin, Y.-S.; Mirny, L.A.; Shoulders, M.D. "Host Proteostasis Modulates Influenza Evolution" eLife 2017, in press.

Wong, M.Y.; DiChiara, A.S.; Suen, P.H.; Chen, K.; Doan, N.-D.; Shoulders, M.D. "Adapting Secretory Proteostasis and Function Through the Unfolded Protein ResponseCurrent Topics in Microbiology and Immunology 2017400, in press.

Maji, B.#; Moore, C.L.#; Zetsche, B.; Volz, S.E.; Zhang, F.; Shoulders, M.D.*; Choudhary, A.* "Multidimensional Chemical Control of CRISPR-Cas9" Nature Chemical Biology 201713, 911. #Co-First Authors; *Co-Corresponding Authors.

DiChiara, A.S.; Taylor, R.J.; Wong, M.Y.; Doan, N.-D.; Del Rosario, A.; Shoulders, M.D. "Mapping and Exploring the Collagen-I Proteostasis Network" ACS Chemical Biology 201611, 1408–1421.

Moore, C.L.; Dewal, M.B.; Nekongo, E.E.; Santiago, S.; Lu, N.B.; Levine, S.S.; Shoulders, M.D. "Transportable, Chemical Genetic Methodology for the Small Molecule-Mediated Inhibition of Heat Shock Factor 1ACS Chemical Biology 2016, 11200–210.

Phillips, A.M.; Shoulders, M.D. "The Path of Least Resistance: Mechanisms to Reduce Influenza's Sensitivity to OseltamivirJournal of Molecular Biology 2016, 428533–537.

Dewal, M.B.; DiChiara, A.S.; Antonopoulos, A.; Taylor, R.J.; Harmon, C.J.; Haslam, S.M.; Dell, A.; Shoulders, M.D. "XBP1s Links the Unfolded Protein Response to the Molecular Architecture of Mature N-Glycans" Cell Chemical Biology 2015, 22, 1301–1312.

Genereux, J.C.; Qu, S.; Zhou, M.; Ryno, L.M.; Wang, S.; Shoulders, M.D.; Kaufman, R.J.; Lasmézasm C.I.; Kelly, J.W.; Wiseman, R.L. "Unfolded Protein Response-Induced ERdj3 Secretion Links Endoplasmic Reticulum Stress to Extracellular ProteostasisEMBO Journal 2015, 34, 419.

Choudhary, A.1; Kamer, K.J.1; Shoulders, M.D.1; Raines, R.T. "4-Ketoproline: An Electrophilic Proline Analog for BioconjugationBiopolymers: Peptide Science 2015, 104, 110115. 1Equal Contribution.

Chen, J.J.1; Genereux, J.C.1; Hulleman, J.D.; Shoulders, M.D.; Wiseman, R.L. “ATF6 Activation Reduces the Secretion and Extracellular Aggregation of Destabilized Variants of an Amyloidogenic ProteinCell Chemical Biology 2014, 21156415741Equal Contribution.

Ryno, L.M.; Genereux, J.C.; Naito, T.; Morimoto, R.I.; Powers, E.T.; Shoulders, M.D.; Wiseman, R.L. "Characterizing the Altered Cellular Proteome Induced by the Stress-Independent Activation of Heat Shock Factor I" ACS Chemical Biology 2014, 9,12731283.

Shoulders, M.D.1; Ryno, L.M.1; Kelly, J.W.; Wiseman, R.L. “Broadly Applicable Methodology for the Dosable, Rapid, and Small Molecule-Mediated Regulation of Transcription Factors in Human Cells” Journal of the American Chemical Society 2013135, 8129–8132. 1Equal Contribution.

Shoulders, M.D.; Ryno, L.M.; Genereux, J.C.; Moresco, J.J.; Tu, P.G.; Wu, C.; Yates, J.R. III; Su, A.I.; Kelly, J.W.; Wiseman, R.L. “Stress-Independent Activation of XBP1s and/or ATF6 Reveals Three Functionally Diverse ER Proteostasis Environments” Cell Reports 20133, 1279–1292.

Krow, G.R.1; Shoulders, M.D.; Edupuganti, R.; Gandla, D.; Yu, F.; Sonnet, P.E.; Sender, M.; Choudhary, A.; DeBrosse, C.; Ross, C.W.,III; Carroll, P.; Raines, R.T.1 “Synthesis of 5-Fluoro- and 5-Hydroxymethanoprolines via Lithiation of N-BOC-Methanopyrrolidines. Constrained Cg-Exo and Cg-Endo Flp and Hyp Conformer Mimics” Journal of Organic Chemistry 201277, 5331–5344. 1Co-Senior Author.

Shoulders, M.D.; Raines, R.T. “Interstrand Dipole-Dipole Interactions Can Stabilize the Collagen Triple Helix” Journal of Biological Chemistry 2011286, 22905–22912.

Krow, G.R.1; Edupuganti, R.; Gandla, D.; Yu, F.; Sender, M.; Sonnet, P.E.; Zdilla, M.J.; DeBrosse, C.; Cannon, K.C.; Ross, C.W., III; Choudhary, A.; Shoulders, M.D.; Raines, R.T.1 “Synthesis of Conformationally Constrained 5-Fluoro- and 5-Hydroxymethanopyrrolidines. Ring Puckered Mimics of Gauche and Anti-3-Fluoro- and 3-Hydroxypyrrolidines” Journal of Organic Chemistry 201176, 3626–3634. 1Co-Senior Author.

Shoulders, M.D.; Kotch F.W.; Choudhary, A.; Guzei, I.A.; Raines, R.T. “The Aberrance of the 4S Diastereomer of 4-Hydroxyproline” Journal of the American Chemical Society, 2010132, 10857–10865.

Shoulders, M.D.; Satyshur, K.A.; Forest, K.T.; Raines, R.T. “Stereoelectronic and Steric Effects in Side Chains Preorganize a Protein Main Chain” Proceedings of the National Academy of Sciences, USA 2010107, 559–564.

Krow, G.R.; Liu, N.; Sender, M.; Lin, G.; Centafont, R.; Sonnet, P.E.; DeBrosse, C.; Ross, C.W., III; Carroll, P.J.; Shoulders, M.D.; Raines, R.T. “Oligomers of a 5-Carboxymethanopyrrolidine b-Amino Acid—A Search for Order” Organic Letters 201012, 5438–5441.

Shoulders, M.D.; Kamer, K.J.; Raines, R.T. “Origin of the Stability Conferred upon Collagen by Fluorination” Bioorganic and Medicinal Chemistry Letters 200919, 3859–3862.

Shoulders, M.D.; Raines, R.T. “Collagen Structure and Stability” Annual Review of Biochemistry 2009,78, 929–958.

Shoulders, M.D.; Raines, R.T. “Modulating Collagen Triple-Helix Stability with 4-Chloro, 4-Fluoro, and 4-Methylprolines” Advances in Experimental Medicine and Biology 2009611, 251–252.

Shoulders, M.D.; Guzei, I.A.; Raines, R.T. “4-Chloroprolines: Synthesis, Conformational Analysis, and Effect on the Collagen Triple Helix” Biopolymers 200889, 443–454.

Shoulders, M.D.; Hodges, J.A.; Raines, R.T. “Reciprocity of Steric and Stereoelectronic Effects in the Collagen Triple Helix” Journal of the American Chemical Society 2006128, 8112–8113.